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FASTQ to gVCF Files

GATK Exome Germline Single Sample Pipeline
Resolved Elizabeth Kiernan Updated on Nov, 2021 Pipelines

gVCF to VCF Multisample File

GATK Join Calling Variants for cohorts pipeline
Resolved DSDE Jenkins Updated on Jan 12, 2021 Pipelines

Case-Control Flow

Flow of case-control commom/rare variants filter on human samples
resolved BCBLab Updated on Apr, 2021 Protocols